Inheritance diagram for Spore_split_merge_spore_move:

Collaboration diagram for Spore_split_merge_spore_move:

Public Member Functions
	Spore_split_merge_spore_move (const char split_name, const char merge_name, double split_prob=1.0, double merge_prob=1.0) throw (jwscxx::base::Arg_error)
	Constructs an Spore_split_merge_spore_move.
bool	run_1 (Sampler_move_parameters *params) throw (jwscxx::base::Exception)
	Runs the split jump move and either accepts or rejects.
bool	run_2 (Sampler_move_parameters *params) throw (jwscxx::base::Exception)
	Runs the merge jump move and either accepts or rejects.
Static Protected Member Functions
static void	propose_1st_split (Spore *proposal_out, double log_prob_out, const Spore *spore) throw (jwscxx::base::Arg_error)
	Creates the first split proposal.
static void	propose_2nd_split (Spore *proposal_out, double log_prob_out, const Spore *split_1) throw (jwscxx::base::Arg_error)
	Creates the second split proposal.
static void	propose_merge (Spore *proposal_out, double log_prob_out, const Structure parent, const Spore hypha_1, const Spore *hypha_2) throw (jwscxx::base::Arg_error)
	Creates the merge proposal.

Detailed Description

MCMC Sampler move that stochastically proposes splitting or merging an Apical_hypha with its Apical_hypha::apical in an Alternaria_model.

Definition at line 280 of file alternaria_moves.h.

Constructor & Destructor Documentation

Spore_split_merge_spore_move::Spore_split_merge_spore_move	(	const char *	split_name,
		const char *	merge_name,
		double	split_prob = `1.0`,
		double	merge_prob = `1.0`
	)		throw (jwscxx::base::Arg_error) `[inline]`

Definition at line 286 of file alternaria_moves.h.

bool Spore_split_merge_spore_move::run_1 ( Sampler_move_parameters * params ) throw (jwscxx::base::Exception) [virtual]

Runs the split jump move and either accepts or rejects.

========================================================================= ------------------ Spore_split_merge_spore_move -----------------------

Parameters:

params Parameters for the move.

Definition at line 1154 of file alternaria_moves.cpp.

bool Spore_split_merge_spore_move::run_2 ( Sampler_move_parameters * params ) throw (jwscxx::base::Exception) [virtual]

Runs the merge jump move and either accepts or rejects.

Parameters:

params Parameters for the move.

Definition at line 1243 of file alternaria_moves.cpp.

void Spore_split_merge_spore_move::propose_1st_split	(	Spore **	proposal_out,
		double *	log_prob_out,
		const Spore *	spore
	)		throw (jwscxx::base::Arg_error) `[static, protected]`

Creates the first split proposal.

Parameters:

proposal_out	Result parameter. The first split spore proposal.
log_prob_out	Result parameter. The log probability of *proposal_out.
spore	Structure to split.

Definition at line 1340 of file alternaria_moves.cpp.

void Spore_split_merge_spore_move::propose_2nd_split	(	Spore **	proposal_out,
		double *	log_prob_out,
		const Spore *	split_1
	)		throw (jwscxx::base::Arg_error) `[static, protected]`

Creates the second split proposal.

Parameters:

proposal_out	Result parameter. The second split spore proposal.
log_prob_out	Result parameter. The log probability of *proposal_out.
split_1	First split spore proposal.

Definition at line 1497 of file alternaria_moves.cpp.

void Spore_split_merge_spore_move::propose_merge	(	Spore **	proposal_out,
		double *	log_prob_out,
		const Structure *	parent,
		const Spore *	spore_1,
		const Spore *	spore_2
	)		throw (jwscxx::base::Arg_error) `[static, protected]`

Creates the merge proposal.

Parameters:

proposal_out	Result parameter. The merged spore proposal.
log_prob_out	Result parameter. The log probability of *proposal_out.
parent	Parent structure of spore_1.
spore_1	First spore to merge.
spore_2	Second spore proposal.

Definition at line 1571 of file alternaria_moves.cpp.

The documentation for this class was generated from the following files: