Printed_apical_hypha Class Reference

A Alternaria apical hypha element that was printed to a file. More...

#include <hypha.h>

Inheritance diagram for Printed_apical_hypha:

Collaboration diagram for Printed_apical_hypha:

List of all members.

Public Member Functions
	Printed_apical_hypha (const Apical_hypha_density *density)
	Constructs a Printed_apical_hypha.
	Printed_apical_hypha (std::istream &in, const Apical_hypha_density *density) throw (jwscxx::base::IO_error, jwscxx::base::Arg_error)
	Constructs a Printed_apical_hypha by reading values from an input stream.
void	read (std::istream &in) throw (jwscxx::base::IO_error, jwscxx::base::Arg_error)
	Reads values for this Printed_apical_hypha from an input stream.
Apical_hypha *	convert (Structure *parent) const throw (jwscxx::base::Arg_error)
	Converts this Printed_apical_hypha to an Apical_hypha.
Protected Attributes
const Apical_hypha_density *	density
	Parameters for density functions over the Apical_hypha.

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Detailed Description

A Alternaria apical hypha element that was printed to a file.

Contains ancestor and descendant IDs instead of pointers.

See also:

Apical_hypha

Definition at line 366 of file hypha.h.

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Constructor & Destructor Documentation

Printed_apical_hypha::Printed_apical_hypha

(

const Apical_hypha_density *

density

)

Constructs a Printed_apical_hypha.

Initializes all members to 0.

Parameters:

density

Apical_hypha_density to use for the Apical_hypha.

Definition at line 1284 of file hypha.cpp.

Printed_apical_hypha::Printed_apical_hypha	(	std::istream &	in,
		const Apical_hypha_density *	density
	)		throw (jwscxx::base::IO_error, jwscxx::base::Arg_error)

Constructs a Printed_apical_hypha by reading values from an input stream.

Parameters:

in	Input stream to read this Printed_apical_hypha from.
density	Apical_hypha_density to use for the Apical_hypha.

Exceptions:

jwscxx::base::Arg_error	A member is not properly formatted or missing a value.
jwscxx::base::IO_error	Could not read a line from the input stream.

Definition at line 1313 of file hypha.cpp.

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Member Function Documentation

void Printed_apical_hypha::read

(

std::istream &

in

)

throw (jwscxx::base::IO_error, jwscxx::base::Arg_error) [virtual]

Reads values for this Printed_apical_hypha from an input stream.

Expects the following format for a Printed_structure to be on the input stream:

    Structure: Apical_hypha::type_str()
           ID: id
     Centroid: x y z
       Length: length
        Width: width
   Base Theta: base_theta
     Base Psi: base_psi
        Theta: theta
          Psi: psi
      Opacity: opacity
       Parent: parent
       Apical: apical
     Laterals: L1 ... Ln
     Log Prob: logprob

Note:

If the value of parent and/or apical is 0, then this Printed_structure has no parent and/or apical.

Parameters:

in	Input stream to read this Printed_structure from.

Exceptions:

jwscxx::base::Arg_error	A member is not properly formatted or missing a value.
jwscxx::base::IO_error	Could not read a line from the input stream.

Implements Printed_structure.

Definition at line 1354 of file hypha.cpp.

Apical_hypha * Printed_apical_hypha::convert

(

Structure *

parent

)

const throw (jwscxx::base::Arg_error) [virtual]

Converts this Printed_apical_hypha to an Apical_hypha.

Parameters:

parent

Parent Structure. Use 0 for the root.

Note:

Does not add the created Apical_hypha to the parent in any way.

Returns:

An Apical_hypha created from this Printed_apical_hypha with its Apical_hypha::parent set to parent.

Exceptions:

jwscxx::base::Arg_error

Apical_hypha values are not in the density parameter ranges.

Implements Printed_apical_structure.

Definition at line 1400 of file hypha.cpp.

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Member Data Documentation

const Apical_hypha_density* Printed_apical_hypha::density [protected]

Parameters for density functions over the Apical_hypha.

Definition at line 402 of file hypha.h.

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The documentation for this class was generated from the following files:

• hypha.h
• hypha.cpp