Inheritance diagram for Apical_hypha_split_merge_apical_move:

Collaboration diagram for Apical_hypha_split_merge_apical_move:

Public Member Functions
	Apical_hypha_split_merge_apical_move (const char split_name, const char merge_name, double split_prob=1.0, double merge_prob=1.0) throw (jwscxx::base::Arg_error)
	Constructs an Apical_hypha_split_merge_apical_move.
bool	run_1 (Sampler_move_parameters *params) throw (jwscxx::base::Exception)
	Runs the split jump move and either accepts or rejects.
bool	run_2 (Sampler_move_parameters *params) throw (jwscxx::base::Exception)
	Runs the merge jump move and either accepts or rejects.
Static Protected Member Functions
static void	propose_1st_split (Apical_hypha *proposal_out, double log_prob_out, const Apical_hypha *hypha) throw (jwscxx::base::Arg_error)
	Creates the first split proposal.
static void	propose_2nd_split (Apical_hypha *proposal_out, double log_prob_out, const Apical_hypha *split_1) throw (jwscxx::base::Arg_error)
	Creates the second split proposal.
static void	propose_merge (Apical_hypha *proposal_out, double log_prob_out, const Structure parent, const Apical_hypha hypha_1, const Apical_hypha *hypha_2) throw (jwscxx::base::Arg_error)
	Creates the merge proposal.

Detailed Description

MCMC Sampler move that stochastically proposes splitting or merging an Apical_hypha with its Apical_hypha::apical in an Alternaria_model.

Definition at line 354 of file alternaria_moves.h.

Constructor & Destructor Documentation

Apical_hypha_split_merge_apical_move::Apical_hypha_split_merge_apical_move	(	const char *	split_name,
		const char *	merge_name,
		double	split_prob = `1.0`,
		double	merge_prob = `1.0`
	)		throw (jwscxx::base::Arg_error) `[inline]`

Definition at line 360 of file alternaria_moves.h.

bool Apical_hypha_split_merge_apical_move::run_1 ( Sampler_move_parameters * params ) throw (jwscxx::base::Exception) [virtual]

Runs the split jump move and either accepts or rejects.

Parameters:

params Parameters for the move.

Definition at line 1841 of file alternaria_moves.cpp.

bool Apical_hypha_split_merge_apical_move::run_2 ( Sampler_move_parameters * params ) throw (jwscxx::base::Exception) [virtual]

Runs the merge jump move and either accepts or rejects.

Parameters:

params Parameters for the move.

Definition at line 1930 of file alternaria_moves.cpp.

void Apical_hypha_split_merge_apical_move::propose_1st_split	(	Apical_hypha **	proposal_out,
		double *	log_prob_out,
		const Apical_hypha *	hypha
	)		throw (jwscxx::base::Arg_error) `[static, protected]`

Creates the first split proposal.

Parameters:

proposal_out	Result parameter. The first split hypha proposal.
log_prob_out	Result parameter. The log probability of *proposal_out.
hypha	Structure to split.

Definition at line 2027 of file alternaria_moves.cpp.

void Apical_hypha_split_merge_apical_move::propose_2nd_split	(	Apical_hypha **	proposal_out,
		double *	log_prob_out,
		const Apical_hypha *	split_1
	)		throw (jwscxx::base::Arg_error) `[static, protected]`

Creates the second split proposal.

Parameters:

proposal_out	Result parameter. The second split hypha proposal.
log_prob_out	Result parameter. The log probability of *proposal_out.
split_1	First split hypha proposal.

Definition at line 2186 of file alternaria_moves.cpp.

void Apical_hypha_split_merge_apical_move::propose_merge	(	Apical_hypha **	proposal_out,
		double *	log_prob_out,
		const Structure *	parent,
		const Apical_hypha *	hypha_1,
		const Apical_hypha *	hypha_2
	)		throw (jwscxx::base::Arg_error) `[static, protected]`

Creates the merge proposal.

Parameters:

proposal_out	Result parameter. The merged hypha proposal.
log_prob_out	Result parameter. The log probability of *proposal_out.
parent	Parent structure of hypha_1.
hypha_1	First hypha to merge.
hypha_2	Second hypha proposal.

Definition at line 2286 of file alternaria_moves.cpp.

The documentation for this class was generated from the following files: