Inheritance diagram for Spore_split_merge_2_apical_move:

Collaboration diagram for Spore_split_merge_2_apical_move:

Public Member Functions
	Spore_split_merge_2_apical_move (const char split_name, const char merge_name, double split_prob=1.0, double merge_prob=1.0) throw (jwscxx::base::Arg_error)
	Constructs a Spore_transition_apical_move.
bool	run_1 (Sampler_move_parameters *params) throw (jwscxx::base::Exception)
	Runs the apical-to-spore jump move and either accepts or rejects.
bool	run_2 (Sampler_move_parameters *params) throw (jwscxx::base::Exception)
	Runs the spore-to-apical jump move and either accepts or rejects.
Static Protected Member Functions
static void	propose_1st_split (Apical_hypha *proposal_out, double log_prob_out, const Apical_hypha_density density, const Spore spore) throw (jwscxx::base::Arg_error)
	Creates the first split proposal.
static void	propose_2nd_split (Apical_hypha *proposal_out, double log_prob_out, const Apical_hypha *split_1) throw (jwscxx::base::Arg_error)
	Creates the second split proposal.
static void	propose_merge (Spore *proposal_out, double log_prob_out, const Structure parent, const Spore_density density, const Apical_hypha hypha_1, const Apical_hypha hypha_2) throw (jwscxx::base::Arg_error)
	Creates the merge proposal.

Detailed Description

MCMC Sampler move that proposes splitting/merging 2 Apical_hypha from/into a Spore.

Definition at line 204 of file alternaria_moves.h.

Constructor & Destructor Documentation

Spore_split_merge_2_apical_move::Spore_split_merge_2_apical_move	(	const char *	split_name,
		const char *	merge_name,
		double	split_prob = `1.0`,
		double	merge_prob = `1.0`
	)		throw (jwscxx::base::Arg_error) `[inline]`

Definition at line 210 of file alternaria_moves.h.

bool Spore_split_merge_2_apical_move::run_1 ( Sampler_move_parameters * params ) throw (jwscxx::base::Exception) [virtual]

Runs the apical-to-spore jump move and either accepts or rejects.

========================================================================= ----------------- Spore_split_merge_2_apical_move ---------------------

Parameters:

params Parameters for the move.

Definition at line 624 of file alternaria_moves.cpp.

bool Spore_split_merge_2_apical_move::run_2 ( Sampler_move_parameters * params ) throw (jwscxx::base::Exception) [virtual]

Runs the spore-to-apical jump move and either accepts or rejects.

Parameters:

params Parameters for the move.

Definition at line 715 of file alternaria_moves.cpp.

void Spore_split_merge_2_apical_move::propose_1st_split	(	Apical_hypha **	proposal_out,
		double *	log_prob_out,
		const Apical_hypha_density *	density,
		const Spore *	spore
	)		throw (jwscxx::base::Arg_error) `[static, protected]`

Creates the first split proposal.

Parameters:

proposal_out	Result parameter. The first split hypha proposal.
log_prob_out	Result parameter. The log probability of *proposal_out.
density	Density over Apical_hypha.
spore	Structure to split.

Definition at line 813 of file alternaria_moves.cpp.

void Spore_split_merge_2_apical_move::propose_2nd_split	(	Apical_hypha **	proposal_out,
		double *	log_prob_out,
		const Apical_hypha *	split_1
	)		throw (jwscxx::base::Arg_error) `[static, protected]`

Creates the second split proposal.

Parameters:

proposal_out	Result parameter. The second split hypha proposal.
log_prob_out	Result parameter. The log probability of *proposal_out.
split_1	First split hypha proposal.

Definition at line 971 of file alternaria_moves.cpp.

void Spore_split_merge_2_apical_move::propose_merge	(	Spore **	proposal_out,
		double *	log_prob_out,
		const Structure *	parent,
		const Spore_density *	density,
		const Apical_hypha *	hypha_1,
		const Apical_hypha *	hypha_2
	)		throw (jwscxx::base::Arg_error) `[static, protected]`

Creates the merge proposal.

Parameters:

proposal_out	Result parameter. The merged spore proposal.
log_prob_out	Result parameter. The log probability of *proposal_out.
parent	Parent structure of hypha_1.
density	Density over Spore.
hypha_1	First hypha to merge.
hypha_2	Second hypha proposal.

Definition at line 1072 of file alternaria_moves.cpp.

The documentation for this class was generated from the following files: