Generates an Alternaria_model, PSF_model, and Imaging_model and corresponding 3D microscopic image data from the models. More...

#include <config.h>
#include <cstdlib>
#include <cstdio>
#include <cstring>
#include <iostream>
#include <sstream>
#include <vector>
#include <inttypes.h>
#include <jwsc/prob/pdf.h>
#include <jwsc/math/constants.h>
#include <jwsc/vector/vector.h>
#include <jwsc/vector/vector_math.h>
#include <jwsc/matrix/matrix.h>
#include <jwsc/matrix/matrix_math.h>
#include <jwsc/image/image.h>
#include <jwsc/image/image_io.h>
#include <jwsc++/base/option.h>
#include <jwsc++/base/exception.h>
#include <jwsc++/graphics/camera.h>
#include "imaging_model.h"
#include "psf_model.h"
#include "structure.h"
#include "spore.h"
#include "hypha.h"
#include "alternaria_model.h"

Classes
struct	Alternaria_gen_modes
	Modes the viewer can be in. More...
Defines
#define	REDBLUE 1
#define	REDGREEN 2
#define	REDCYAN 3
#define	BLUERED 4
#define	GREENRED 5
#define	CYANRED 6
#define	VIEW_WIDTH 800
#define	VIEW_HEIGHT 800
#define	APERTURE 60.0f
#define	CLIP_NEAR 10.0f
#define	CLIP_FAR 3000.0f
#define	GLASSES_TYPE REDCYAN
#define	CAPTURE_FMT "capture-%04u.tiff"
#define	OBJECT_SCALE 1.0
#define	SEED 2537984
#define	IMG_IN_FNAME 0
#define	IMG_OUT_FNAME "imaging.model"
#define	PSF_IN_FNAME 0
#define	PSF_OUT_FNAME "psf.model"
#define	ALT_IN_FNAME 0
#define	ALT_OUT_FNAME "alternaria.model"
#define	ALT_SCENE_FMT 0
#define	PSF_H_FMT 0
#define	NUM_SCENE_COLS 128
#define	NUM_SCENE_ROWS 128
#define	NUM_SCENE_IMGS 128
#define	CENTROID_MIN -5000.0f
#define	CENTROID_MAX 5000.0f
#define	NUM_STRUCTS 300
#define	BASE_LEVEL 0
Functions
void	init_modes ()
	Initialize the viewer modes.
void	init_camera () throw (Arg_error)
	Initializes the camera to default values.
void	clean_up ()
	Cleans up the program to prepare for exit.
void	reset ()
	Resets the state of the viewer.
void	render_world_axis ()
	Renders the 3D world axis.
void	render_focal_plane ()
	Renders the focal plane.
void	render_scene ()
	Renders the scene into the viewer.
void	display_glut_anaglyph ()
	Display the model as an anaglyph (3D stereo pair).
void	display_glut_regular ()
	Display the model under normal conditions.
void	display_glut ()
	Display callback for the GLUT library.
void	reshape_glut (int w, int h)
	Reshape callback for the GLUT library.
void	keyboard_glut (unsigned char key, int a, int b)
	Keyboard callback for the GLUT library.
void	mouse_glut (int button, int state, int x, int y)
	Mouse callback for the GLUT library.
void	main_menu_glut (int id)
	Main menu callback for the GLUT library.
void	option_menu_glut (int id)
	Option submenu callback for the GLUT library.
void	navigation_menu_glut (int id)
	Keyboard navigation submenu callback for the GLUT library.
void	focal_length_menu_glut (int id)
	Focal length submenu callback for the GLUT library.
void	init_glut (int argc, char **argv)
	Initializes the GLUT to default values.
void	init_gl ()
	Initializes the GL to default values.
void	print_usage (void)
	Prints the usage of the program.
void	process_help_opt (void)
	Processes the 'help' program options.
void	process_version_opt (void)
	Processes the 'version' program options.
void	process_options_opt (const char *arg) throw (Arg_error)
	Processes the 'options' program options.
void	process_seed_opt (const char *arg) throw (Arg_error)
	Processes the 'seed' program options.
void	process_apical_hypha_length_opt (const char *arg) throw (Arg_error)
	Processes the 'apical-hypha-length' program options.
void	process_lateral_hypha_length_opt (const char *arg) throw (Arg_error)
	Processes the 'lateral-hypha-length' program options.
void	process_apical_hypha_width_opt (const char *arg) throw (Arg_error)
	Processes the 'apical-hypha-width' program options.
void	process_lateral_hypha_width_opt (const char *arg) throw (Arg_error)
	Processes the 'lateral-hypha-width' program options.
void	process_apical_hypha_theta_opt (const char *arg) throw (Arg_error)
	Processes the 'apical-hypha-theta' program options.
void	process_lateral_hypha_1_theta_opt (const char *arg) throw (Arg_error)
	Processes the 'lateral-hypha-1-theta' program options.
void	process_lateral_hypha_n_theta_opt (const char *arg) throw (Arg_error)
	Processes the 'lateral-hypha-n-theta' program options.
void	process_hypha_psi_opt (const char *arg) throw (Arg_error)
	Processes the 'hypha-psi' program options.
void	process_hypha_opacity_opt (const char *arg) throw (Arg_error)
	Processes the 'hypha-opacity' program options.
void	process_lateral_hypha_dist_opt (const char *arg) throw (Arg_error)
	Processes the 'lateral-hypha-dist' program options.
void	process_spore_length_opt (const char *arg) throw (Arg_error)
	Processes the 'spore-length' program options.
void	process_spore_width_opt (const char *arg) throw (Arg_error)
	Processes the 'spore-width' program options.
void	process_spore_theta_opt (const char *arg) throw (Arg_error)
	Processes the 'spore-theta' program options.
void	process_spore_psi_opt (const char *arg) throw (Arg_error)
	Processes the 'spore-psi' program options.
void	process_spore_opacity_opt (const char *arg) throw (Arg_error)
	Processes the 'spore-opacity' program options.
void	process_psf_alpha_opt (const char *arg) throw (Arg_error)
	Processes the 'psf-alpha' program options.
void	process_psf_beta_opt (const char *arg) throw (Arg_error)
	Processes the 'psf-beta' program options.
void	process_psf_gamma_opt (const char *arg) throw (Arg_error)
	Processes the 'psf-gamma' program options.
void	process_img_bg_opt (const char *arg) throw (Arg_error)
	Processes the 'img-bg' program options.
void	process_levels_p_opt (const char *arg) throw (Arg_error)
	Processes the 'levels-p' program options.
void	process_structs_p_opt (const char *arg) throw (Arg_error)
	Processes the 'structs-p' program options.
void	process_img_in_opt (const char *arg) throw (Arg_error)
	Processes the 'img-in' program options.
void	process_img_out_opt (const char *arg) throw (Arg_error)
	Processes the 'img-out' program options.
void	process_psf_in_opt (const char *arg) throw (Arg_error)
	Processes the 'psf-in' program options.
void	process_psf_out_opt (const char *arg) throw (Arg_error)
	Processes the 'psf-out' program options.
void	process_alt_in_opt (const char *arg) throw (Arg_error)
	Processes the 'alt-in' program options.
void	process_alt_out_opt (const char *arg) throw (Arg_error)
	Processes the 'alt-out' program options.
void	process_scene_fmt_opt (const char *arg) throw (Arg_error)
	Processes the 'scene-fmt' program options.
void	process_scene_size_opt (const char *arg) throw (Arg_error)
	Processes the 'scene-size' program options.
void	process_scene_scale_opt (const char *arg) throw (Arg_error)
	Processes the 'scene-scale' program options.
void	process_psf_fmt_opt (const char *arg) throw (Arg_error)
	Processes the 'psf_fmt' program options.
void	process_num_structs_opt (const char *arg) throw (Arg_error)
	Processes the 'num-structs' program options.
void	process_interactive_opt () throw (Arg_error)
	Processes the 'interactive' program options.
void	process_view_size_opt (const char *arg) throw (Arg_error)
	Processes the 'view-size' program options.
void	process_glasses_opt (const char *arg) throw (Arg_error)
	Processes the 'glasses' program options.
void	process_capture_opt (const char *arg) throw (Arg_error)
	Processes the 'capture' program options.
void	process_base_level_opt (const char *arg) throw (Arg_error)
	Processes the 'base-level' program options.
void	init_options ()
	Initialize the options.
void *	operator new (size_t s) throw (std::bad_alloc)
void	operator delete (void *ptr) throw ()
int	main (int argc, char **argv)
	Main function for the alternaria program.
Variables
Options *	opts = 0
	Program options.
uint32_t	view_width = VIEW_WIDTH
	Width of the viewing window.
uint32_t	view_height = VIEW_HEIGHT
	Height of the viewing window.
float	aperture = APERTURE
	Viewing aperture.
float	clip_near = CLIP_NEAR
	Near clipping plane.
float	clip_far = CLIP_FAR
	Far clipping plane.
int	glasses_type = GLASSES_TYPE
	Anaglyph glasses type.
const char *	capture_fmt = CAPTURE_FMT
	Printf-formatted file to write captured view images to.
float	object_scale = OBJECT_SCALE
	Scale of the objects.
uint32_t	seed = SEED
	Random seed.
const char *	img_in_fname = IMG_IN_FNAME
	Imaging_model file name to read from.
const char *	img_out_fname = IMG_OUT_FNAME
	Imaging_model file name to write to.
const char *	psf_in_fname = PSF_IN_FNAME
	PSF_model file name to read from.
const char *	psf_out_fname = PSF_OUT_FNAME
	PSF_model file name to write to.
const char *	alt_in_fname = ALT_IN_FNAME
	Alternaria file name to read from.
const char *	alt_out_fname = ALT_OUT_FNAME
	Alternaria file name to write to.
const char *	alt_scene_fmt = ALT_SCENE_FMT
	Printf formatted file name for the output Alternaria_model::scene images.
const char *	psf_h_fmt = PSF_H_FMT
	Printf formatted file name for the output PSF::h images.
uint32_t	num_structs = NUM_STRUCTS
	Number of Structures to generate in the Alternaria.
uint32_t	base_level = BASE_LEVEL
	Base level for the root Structure.
Imaging_window *	img_window = 0
	Imaging_model window.
Imaging_scale *	img_scale = 0
	Imaging_model scale.
Imaging_model *	imaging = 0
	Imaging_model to test.
PSF_padding *	padding = 0
	PSF_model padding.
PSF_model *	psf = 0
	PSF_model to test.
Alternaria *	alternaria = 0
	Alternaria to test.
Imaging_model_density *	imaging_d = 0
	Imaging_model density.
PSF_model_density *	psf_d = 0
	PSF_model density.
Apical_hypha_density *	apical_hypha_d = 0
	Apical_hypha density.
Lateral_hypha_density *	lateral_hypha_1_d = 0
	Lateral_hypha density at level 1.
Lateral_hypha_density *	lateral_hypha_n_d = 0
	Lateral_hypha density at level > 1.
Spore_density *	spore_d = 0
	Spore density.
Alternaria_density *	alt_d = 0
	Alternaria density.
bool	interactive = 0
	Put the Alternaria in an interactive GLUT/GL viewer.
Stereo_camera_f *	camera = 0
	3D viewing camera.
GLUquadric *	quad_fill = 0
	Filled quadric.
GLUquadric *	quad_wire = 0
	Wire-frame quadric.
Structure *	highlight = 0
	Pointer to the currently selected Structure in alternaria to modify.
struct Alternaria_gen_modes	modes

Detailed Description

Generates an Alternaria_model, PSF_model, and Imaging_model and corresponding 3D microscopic image data from the models.

Author:: Joseph Schlecht

License:: Creative Commons BY-NC-SA 3.0

Definition in file alternaria_gen.cpp.

Define Documentation

#define REDBLUE 1

Definition at line 94 of file alternaria_gen.cpp.

#define REDGREEN 2

Definition at line 95 of file alternaria_gen.cpp.

#define REDCYAN 3

Definition at line 96 of file alternaria_gen.cpp.

#define BLUERED 4

Definition at line 97 of file alternaria_gen.cpp.

#define GREENRED 5

Definition at line 98 of file alternaria_gen.cpp.

#define CYANRED 6

Definition at line 99 of file alternaria_gen.cpp.

#define VIEW_WIDTH 800

Definition at line 102 of file alternaria_gen.cpp.

#define VIEW_HEIGHT 800

Definition at line 103 of file alternaria_gen.cpp.

#define APERTURE 60.0f

Definition at line 104 of file alternaria_gen.cpp.

#define CLIP_NEAR 10.0f

Definition at line 105 of file alternaria_gen.cpp.

#define CLIP_FAR 3000.0f

Definition at line 106 of file alternaria_gen.cpp.

#define GLASSES_TYPE REDCYAN

Definition at line 107 of file alternaria_gen.cpp.

#define CAPTURE_FMT "capture-%04u.tiff"

Definition at line 108 of file alternaria_gen.cpp.

#define OBJECT_SCALE 1.0

Definition at line 109 of file alternaria_gen.cpp.

#define SEED 2537984

Definition at line 110 of file alternaria_gen.cpp.

#define IMG_IN_FNAME 0

Definition at line 111 of file alternaria_gen.cpp.

#define IMG_OUT_FNAME "imaging.model"

Definition at line 112 of file alternaria_gen.cpp.

#define PSF_IN_FNAME 0

Definition at line 113 of file alternaria_gen.cpp.

#define PSF_OUT_FNAME "psf.model"

Definition at line 114 of file alternaria_gen.cpp.

#define ALT_IN_FNAME 0

Definition at line 115 of file alternaria_gen.cpp.

#define ALT_OUT_FNAME "alternaria.model"

Definition at line 116 of file alternaria_gen.cpp.

#define ALT_SCENE_FMT 0

Definition at line 117 of file alternaria_gen.cpp.

#define PSF_H_FMT 0

Definition at line 118 of file alternaria_gen.cpp.

#define NUM_SCENE_COLS 128

Definition at line 119 of file alternaria_gen.cpp.

#define NUM_SCENE_ROWS 128

Definition at line 120 of file alternaria_gen.cpp.

#define NUM_SCENE_IMGS 128

Definition at line 121 of file alternaria_gen.cpp.

#define CENTROID_MIN -5000.0f

Definition at line 122 of file alternaria_gen.cpp.

#define CENTROID_MAX 5000.0f

Definition at line 123 of file alternaria_gen.cpp.

#define NUM_STRUCTS 300

Definition at line 124 of file alternaria_gen.cpp.

#define BASE_LEVEL 0

Definition at line 125 of file alternaria_gen.cpp.

Function Documentation

void init_modes ( )

Initialize the viewer modes.

Definition at line 301 of file alternaria_gen.cpp.

void init_camera ( ) throw (Arg_error)

Initializes the camera to default values.

Definition at line 315 of file alternaria_gen.cpp.

void clean_up ( )

Cleans up the program to prepare for exit.

Used to check for memory leaks.

Definition at line 328 of file alternaria_gen.cpp.

void reset ( )

Resets the state of the viewer.

Definition at line 350 of file alternaria_gen.cpp.

void render_world_axis ( )

Renders the 3D world axis.

Definition at line 360 of file alternaria_gen.cpp.

void render_focal_plane ( )

Renders the focal plane.

Definition at line 411 of file alternaria_gen.cpp.

void render_scene ( )

Renders the scene into the viewer.

Definition at line 461 of file alternaria_gen.cpp.

void display_glut_anaglyph ( )

Display the model as an anaglyph (3D stereo pair).

Reset the color mask.

Definition at line 485 of file alternaria_gen.cpp.

void display_glut_regular ( )

Display the model under normal conditions.

Definition at line 590 of file alternaria_gen.cpp.

void display_glut ( )

Display callback for the GLUT library.

Definition at line 623 of file alternaria_gen.cpp.

void reshape_glut	(	int	w,
		int	h
	)

Reshape callback for the GLUT library.

Definition at line 647 of file alternaria_gen.cpp.

void keyboard_glut	(	unsigned char	key,
		int	a,
		int	b
	)

Keyboard callback for the GLUT library.

Definition at line 656 of file alternaria_gen.cpp.

void mouse_glut	(	int	button,
		int	state,
		int	x,
		int	y
	)

Mouse callback for the GLUT library.

Definition at line 1302 of file alternaria_gen.cpp.

void main_menu_glut ( int id )

Main menu callback for the GLUT library.

Definition at line 1361 of file alternaria_gen.cpp.

void option_menu_glut ( int id )

Option submenu callback for the GLUT library.

Definition at line 1380 of file alternaria_gen.cpp.

void navigation_menu_glut ( int id )

Keyboard navigation submenu callback for the GLUT library.

Definition at line 1400 of file alternaria_gen.cpp.

void focal_length_menu_glut ( int id )

Focal length submenu callback for the GLUT library.

Definition at line 1423 of file alternaria_gen.cpp.

void init_glut	(	int	argc,
		char **	argv
	)

Initializes the GLUT to default values.

Definition at line 1439 of file alternaria_gen.cpp.

void init_gl ( )

Initializes the GL to default values.

Definition at line 1477 of file alternaria_gen.cpp.

void print_usage ( void )

Prints the usage of the program.

Definition at line 1529 of file alternaria_gen.cpp.

void process_help_opt ( void )

Processes the 'help' program options.

Definition at line 1537 of file alternaria_gen.cpp.

void process_version_opt ( void )

Processes the 'version' program options.

Definition at line 1545 of file alternaria_gen.cpp.

void process_options_opt ( const char * arg ) throw (Arg_error)

Processes the 'options' program options.

Definition at line 1553 of file alternaria_gen.cpp.

void process_seed_opt ( const char * arg ) throw (Arg_error)

Processes the 'seed' program options.

Definition at line 1570 of file alternaria_gen.cpp.

void process_apical_hypha_length_opt ( const char * arg ) throw (Arg_error)

Processes the 'apical-hypha-length' program options.

Definition at line 1583 of file alternaria_gen.cpp.

void process_lateral_hypha_length_opt ( const char * arg ) throw (Arg_error)

Processes the 'lateral-hypha-length' program options.

Definition at line 1608 of file alternaria_gen.cpp.

void process_apical_hypha_width_opt ( const char * arg ) throw (Arg_error)

Processes the 'apical-hypha-width' program options.

Definition at line 1634 of file alternaria_gen.cpp.

void process_lateral_hypha_width_opt ( const char * arg ) throw (Arg_error)

Processes the 'lateral-hypha-width' program options.

Definition at line 1659 of file alternaria_gen.cpp.

void process_apical_hypha_theta_opt ( const char * arg ) throw (Arg_error)

Processes the 'apical-hypha-theta' program options.

Definition at line 1685 of file alternaria_gen.cpp.

void process_lateral_hypha_1_theta_opt ( const char * arg ) throw (Arg_error)

Processes the 'lateral-hypha-1-theta' program options.

Definition at line 1710 of file alternaria_gen.cpp.

void process_lateral_hypha_n_theta_opt ( const char * arg ) throw (Arg_error)

Processes the 'lateral-hypha-n-theta' program options.

Definition at line 1735 of file alternaria_gen.cpp.

void process_hypha_psi_opt ( const char * arg ) throw (Arg_error)

Processes the 'hypha-psi' program options.

Definition at line 1760 of file alternaria_gen.cpp.

void process_hypha_opacity_opt ( const char * arg ) throw (Arg_error)

Processes the 'hypha-opacity' program options.

Definition at line 1787 of file alternaria_gen.cpp.

void process_lateral_hypha_dist_opt ( const char * arg ) throw (Arg_error)

Processes the 'lateral-hypha-dist' program options.

Definition at line 1814 of file alternaria_gen.cpp.

void process_spore_length_opt ( const char * arg ) throw (Arg_error)

Processes the 'spore-length' program options.

Definition at line 1840 of file alternaria_gen.cpp.

void process_spore_width_opt ( const char * arg ) throw (Arg_error)

Processes the 'spore-width' program options.

Definition at line 1865 of file alternaria_gen.cpp.

void process_spore_theta_opt ( const char * arg ) throw (Arg_error)

Processes the 'spore-theta' program options.

Definition at line 1890 of file alternaria_gen.cpp.

void process_spore_psi_opt ( const char * arg ) throw (Arg_error)

Processes the 'spore-psi' program options.

Definition at line 1915 of file alternaria_gen.cpp.

void process_spore_opacity_opt ( const char * arg ) throw (Arg_error)

Processes the 'spore-opacity' program options.

Definition at line 1940 of file alternaria_gen.cpp.

void process_psf_alpha_opt ( const char * arg ) throw (Arg_error)

Processes the 'psf-alpha' program options.

Definition at line 1965 of file alternaria_gen.cpp.

void process_psf_beta_opt ( const char * arg ) throw (Arg_error)

Processes the 'psf-beta' program options.

Definition at line 1990 of file alternaria_gen.cpp.

void process_psf_gamma_opt ( const char * arg ) throw (Arg_error)

Processes the 'psf-gamma' program options.

Definition at line 2015 of file alternaria_gen.cpp.

void process_img_bg_opt ( const char * arg ) throw (Arg_error)

Processes the 'img-bg' program options.

Definition at line 2040 of file alternaria_gen.cpp.

void process_levels_p_opt ( const char * arg ) throw (Arg_error)

Processes the 'levels-p' program options.

Definition at line 2065 of file alternaria_gen.cpp.

void process_structs_p_opt ( const char * arg ) throw (Arg_error)

Processes the 'structs-p' program options.

Definition at line 2090 of file alternaria_gen.cpp.

void process_img_in_opt ( const char * arg ) throw (Arg_error)

Processes the 'img-in' program options.

Definition at line 2116 of file alternaria_gen.cpp.

void process_img_out_opt ( const char * arg ) throw (Arg_error)

Processes the 'img-out' program options.

Definition at line 2126 of file alternaria_gen.cpp.

void process_psf_in_opt ( const char * arg ) throw (Arg_error)

Processes the 'psf-in' program options.

Definition at line 2136 of file alternaria_gen.cpp.

void process_psf_out_opt ( const char * arg ) throw (Arg_error)

Processes the 'psf-out' program options.

Definition at line 2146 of file alternaria_gen.cpp.

void process_alt_in_opt ( const char * arg ) throw (Arg_error)

Processes the 'alt-in' program options.

Definition at line 2156 of file alternaria_gen.cpp.

void process_alt_out_opt ( const char * arg ) throw (Arg_error)

Processes the 'alt-out' program options.

Definition at line 2166 of file alternaria_gen.cpp.

void process_scene_fmt_opt ( const char * arg ) throw (Arg_error)

Processes the 'scene-fmt' program options.

Definition at line 2176 of file alternaria_gen.cpp.

void process_scene_size_opt ( const char * arg ) throw (Arg_error)

Processes the 'scene-size' program options.

Definition at line 2186 of file alternaria_gen.cpp.

void process_scene_scale_opt ( const char * arg ) throw (Arg_error)

Processes the 'scene-scale' program options.

Definition at line 2211 of file alternaria_gen.cpp.

void process_psf_fmt_opt ( const char * arg ) throw (Arg_error)

Processes the 'psf_fmt' program options.

Definition at line 2236 of file alternaria_gen.cpp.

void process_num_structs_opt ( const char * arg ) throw (Arg_error)

Processes the 'num-structs' program options.

Definition at line 2246 of file alternaria_gen.cpp.

void process_interactive_opt ( ) throw (Arg_error)

Processes the 'interactive' program options.

Definition at line 2259 of file alternaria_gen.cpp.

void process_view_size_opt ( const char * arg ) throw (Arg_error)

Processes the 'view-size' program options.

Definition at line 2265 of file alternaria_gen.cpp.

void process_glasses_opt ( const char * arg ) throw (Arg_error)

Processes the 'glasses' program options.

Definition at line 2286 of file alternaria_gen.cpp.

void process_capture_opt ( const char * arg ) throw (Arg_error)

Processes the 'capture' program options.

Definition at line 2311 of file alternaria_gen.cpp.

void process_base_level_opt ( const char * arg ) throw (Arg_error)

Processes the 'base-level' program options.

Definition at line 2321 of file alternaria_gen.cpp.

void init_options ( )

Initialize the options.

Definition at line 2334 of file alternaria_gen.cpp.

void* operator new ( size_t s ) throw (std::bad_alloc)

Definition at line 2518 of file alternaria_gen.cpp.

void operator delete ( void * ptr ) throw ()

Definition at line 2524 of file alternaria_gen.cpp.

int main	(	int	argc,
		char **	argv
	)

Main function for the alternaria program.

Definition at line 2534 of file alternaria_gen.cpp.

Variable Documentation

Options* opts = 0

Program options.

Definition at line 142 of file alternaria_gen.cpp.

uint32_t view_width = VIEW_WIDTH

Width of the viewing window.

Definition at line 145 of file alternaria_gen.cpp.

uint32_t view_height = VIEW_HEIGHT

Height of the viewing window.

Definition at line 148 of file alternaria_gen.cpp.

float aperture = APERTURE

Viewing aperture.

Definition at line 151 of file alternaria_gen.cpp.

float clip_near = CLIP_NEAR

Near clipping plane.

Definition at line 154 of file alternaria_gen.cpp.

float clip_far = CLIP_FAR

Far clipping plane.

Definition at line 157 of file alternaria_gen.cpp.

int glasses_type = GLASSES_TYPE

Anaglyph glasses type.

Definition at line 160 of file alternaria_gen.cpp.

const char* capture_fmt = CAPTURE_FMT

Printf-formatted file to write captured view images to.

Definition at line 163 of file alternaria_gen.cpp.

float object_scale = OBJECT_SCALE

Scale of the objects.

Definition at line 166 of file alternaria_gen.cpp.

uint32_t seed = SEED

Random seed.

Definition at line 169 of file alternaria_gen.cpp.

const char* img_in_fname = IMG_IN_FNAME

Imaging_model file name to read from.

Definition at line 172 of file alternaria_gen.cpp.

const char* img_out_fname = IMG_OUT_FNAME

Imaging_model file name to write to.

Definition at line 175 of file alternaria_gen.cpp.

const char* psf_in_fname = PSF_IN_FNAME

PSF_model file name to read from.

Definition at line 178 of file alternaria_gen.cpp.

const char* psf_out_fname = PSF_OUT_FNAME

PSF_model file name to write to.

Definition at line 181 of file alternaria_gen.cpp.

const char* alt_in_fname = ALT_IN_FNAME

Alternaria file name to read from.

Definition at line 184 of file alternaria_gen.cpp.

const char* alt_out_fname = ALT_OUT_FNAME

Alternaria file name to write to.

Definition at line 187 of file alternaria_gen.cpp.

const char* alt_scene_fmt = ALT_SCENE_FMT

Printf formatted file name for the output Alternaria_model::scene images.

Definition at line 193 of file alternaria_gen.cpp.

const char* psf_h_fmt = PSF_H_FMT

Printf formatted file name for the output PSF::h images.

Definition at line 196 of file alternaria_gen.cpp.

uint32_t num_structs = NUM_STRUCTS

Number of Structures to generate in the Alternaria.

Definition at line 199 of file alternaria_gen.cpp.

uint32_t base_level = BASE_LEVEL

Base level for the root Structure.

Definition at line 202 of file alternaria_gen.cpp.

Imaging_window* img_window = 0

Imaging_model window.

Definition at line 205 of file alternaria_gen.cpp.

Imaging_scale* img_scale = 0

Imaging_model scale.

Definition at line 208 of file alternaria_gen.cpp.

Imaging_model* imaging = 0

Imaging_model to test.

Definition at line 211 of file alternaria_gen.cpp.

PSF_padding* padding = 0

PSF_model padding.

Definition at line 214 of file alternaria_gen.cpp.

PSF_model* psf = 0

PSF_model to test.

Definition at line 217 of file alternaria_gen.cpp.

Alternaria* alternaria = 0

Alternaria to test.

Definition at line 220 of file alternaria_gen.cpp.

Imaging_model_density* imaging_d = 0

Imaging_model density.

Definition at line 223 of file alternaria_gen.cpp.

PSF_model_density* psf_d = 0

PSF_model density.

Definition at line 226 of file alternaria_gen.cpp.

Apical_hypha_density* apical_hypha_d = 0

Apical_hypha density.

Definition at line 229 of file alternaria_gen.cpp.

Lateral_hypha_density* lateral_hypha_1_d = 0

Lateral_hypha density at level 1.

Definition at line 232 of file alternaria_gen.cpp.

Lateral_hypha_density* lateral_hypha_n_d = 0

Lateral_hypha density at level > 1.

Definition at line 235 of file alternaria_gen.cpp.

Spore_density* spore_d = 0

Spore density.

Definition at line 238 of file alternaria_gen.cpp.

Alternaria_density* alt_d = 0

Alternaria density.

Definition at line 241 of file alternaria_gen.cpp.

bool interactive = 0

Put the Alternaria in an interactive GLUT/GL viewer.

Definition at line 244 of file alternaria_gen.cpp.

Stereo_camera_f* camera = 0

3D viewing camera.

Definition at line 247 of file alternaria_gen.cpp.

GLUquadric* quad_fill = 0

Filled quadric.

Definition at line 250 of file alternaria_gen.cpp.

GLUquadric* quad_wire = 0

Wire-frame quadric.

Definition at line 253 of file alternaria_gen.cpp.

Structure* highlight = 0

Pointer to the currently selected Structure in alternaria to modify.

Definition at line 259 of file alternaria_gen.cpp.

struct Alternaria_gen_modes modes

Classes

Defines

Functions

Variables

Detailed Description

Define Documentation

Function Documentation

Variable Documentation