Haplo Prediction
predict haplogroups
weka.h
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00001 /*
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00033 
00034 
00046 #ifndef WEKA_H
00047 #define WEKA_H
00048 
00049 
00050 #include <config.h>
00051 
00052 #include <stdlib.h>
00053 #include <inttypes.h>
00054 
00055 #include <jwsc/base/error.h>
00056 #include <jwsc/vector/vector.h>
00057 #include <jwsc/matrix/matrix.h>
00058 
00059 
00061 Error* train_weka_j48_model
00062 (
00063     const Vector_u32* labels, 
00064     const Matrix_i32* markers,
00065     const char*       labels_fname,
00066     const char*       model_fname,
00067     const char*       weka_jar_fname
00068 );
00069 
00070 
00072 Error* train_weka_part_model
00073 (
00074     const Vector_u32* labels, 
00075     const Matrix_i32* markers,
00076     const char*       labels_fname,
00077     const char*       model_fname,
00078     const char*       weka_jar_fname
00079 );
00080 
00081 
00086 Error* predict_labels_with_weka_j48_model
00087 (
00088     Vector_u32**      labels_out,
00089     Vector_d**        confs_out,
00090     const Matrix_i32* markers,
00091     const char*       labels_fname,
00092     const char*       model_fname,
00093     const char*       weka_jar_fname
00094 );
00095 
00096 
00101 Error* predict_labels_with_weka_part_model
00102 (
00103     Vector_u32**      labels_out,
00104     Vector_d**        confs_out,
00105     const Matrix_i32* markers,
00106     const char*       labels_fname,
00107     const char*       model_fname,
00108     const char*       weka_jar_fname
00109 );
00110 
00111 
00113 typedef struct Weka_model_node
00114 {
00120     const struct Weka_model_node* parent;
00121 
00127     uint32_t parent_label;
00128 
00130     uint32_t num_groups;
00131 
00137     struct Weka_model_node** subtrees;
00138 
00140     Vector_u32* labels;
00141 
00143     Vector_u32** altlabels;
00144 
00146     char* labels_fname;
00147 
00149     char* model_fname;
00150 } 
00151 Weka_model_node;
00152 
00153 
00155 typedef  Weka_model_node  Weka_model_tree;
00156 
00157 
00159 Error* train_weka_j48_model_tree
00160 (
00161     Weka_model_tree** tree_out,
00162     const Vector_u32* labels, 
00163     const Matrix_i32* markers,
00164     const char*       tree_xml_fname,
00165     const char*       tree_dtd_fname,
00166     const char*       model_dirname,
00167     const char*       weka_jar_fname
00168 );
00169 
00170 
00172 Error* train_weka_part_model_tree
00173 (
00174     Weka_model_tree** tree_out,
00175     const Vector_u32* labels, 
00176     const Matrix_i32* markers,
00177     const char*       tree_xml_fname,
00178     const char*       tree_dtd_fname,
00179     const char*       model_dirname,
00180     const char*       weka_jar_fname
00181 );
00182 
00183 
00188 Error* predict_labels_with_weka_j48_model_tree
00189 (
00190     Vector_u32**           labels_out,
00191     Vector_d**             confidence_out,
00192     const Matrix_i32*      markers,
00193     const Weka_model_tree* tree,
00194     const char*            weka_jar_fname
00195 );
00196 
00197 
00202 Error* predict_labels_with_weka_part_model_tree
00203 (
00204     Vector_u32**           labels_out,
00205     Vector_d**             confidence_out,
00206     const Matrix_i32*      markers,
00207     const Weka_model_tree* tree,
00208     const char*            weka_jar_fname
00209 );
00210 
00211 
00213 Error* read_weka_model_tree
00214 (
00215     Weka_model_tree** tree_out,
00216     const char*       tree_xml_fname,
00217     const char*       tree_dtd_fname,
00218     const char*       model_dirname
00219 );
00220 
00221 
00223 void free_weka_model_tree(Weka_model_tree* tree);
00224 
00225 
00226 #endif