|
[1]
|
Adkins, R. M.
Comparison of the accuracy of methods of computational haplotype
inference using a large empirical dataset.
BMC Genetics 5, 22 (2004).
[ PDF ]
Keywords: y chromosome
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[2]
|
Athey, T. W.
Haplogroup prediction from Y-STR values using a
Bayesian-allele-frequency approach.
Journal of Genetic Geneology 2 (2006), 34-39.
[ PDF ]
Keywords: y chromosome, haplogroups, statistical inference
|
|
[3]
|
Behar, D. M., Garrigan, D., Kaplan, M. E., Mobasher, Z., and et al.
Contrasting patterns of Y chromosome variation in Ashkenazi
Jewish and host non-Jewish European populations.
Human Genetics 114, 4 (March 2004), 354-365.
[ PDF ]
Keywords: y chromosome
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[4]
|
Bell, P. A., Chaturvedi, S., Gelfand, C. A., Huang, C. Y., Kochersperger,
M., and et al.
SNPstream UHT: ultra-high throughput SNP genotyping for
pharmacogenomics and drug discovery.
BioTechniques 34, 3 (2002), 496.
Keywords: y chromosome
|
|
[5]
|
Bishop, C. M.
Pattern recognition and machine learning.
Springer, 2006.
Keywords: pattern recognition, machine learning
|
|
[6]
|
Bosch, E., Calafell, F., Santos, F., Perez-Lezaun, A., and et al.
Variation in short tandem repeats is deeply structured by genetic
background on the human Y chromosome.
The American Journal of Human Genetics 65 (1999), 1623-1638.
[ PDF ]
Keywords: y chromosome
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[7]
|
Butler, J. M., Schoske, R., Vallone, P. M., Kline, M. C., Redd, A. J., and
Hammer, M. F.
A novel multiplex for simultaneous amplification of 20 Y chromosome
str markers.
Forensic Science International 129, 1 (September 2002), 10-24.
[ PDF ]
Keywords: y chromosome
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|
[8]
|
Cann, R. L., Stoneking, M., and Wilson, A. C.
Mitochondrial DNA and human evolution.
Nature 325 (1987), 31-36.
Keywords: human evolution
|
|
[9]
|
Chang, C.-C., and Lin, C.-J.
LIBSVM: a library for support vector machines, 2001.
Software available at http://www.csie.ntu.edu.tw/ cjlin/libsvm.
Keywords: support vector machines
|
|
[10]
|
Cinnioglu, C., King, R., Kivisild, T., Kalfoglu, E., and et al.
Excavating y-chromosome haplotype strata in Anatolia.
Human Genetics 114 (2004), 127-148.
Keywords: haplogroups, y chromosome
|
|
[11]
|
Dietterich, T. G.
Ensemble methods in machine learning.
In Proceedings of the First International Workshop on Multiple
Classifier Systems (2000), vol. 1857, pp. 1-15.
Keywords: machine learning, ensemble methods
|
|
[12]
|
Hammer, M. F., Chamberlain, V. F., Kearney, V. F., Stover, D., Zhang, G.,
Karafet, T., Walsh, B., and Redd, A. J.
Population structure of Y chromosome SNP haplogroups in the
United States and forensic implications for constructing Y chromosome
STR databases.
Forensic Science International 164, 1 (December 2006), 45-55.
[ PDF ]
Keywords: y chromosome, haplogroups
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[13]
|
Hammer, M. F., and Garrigan, D.
Reconstructing human origins in the genomic era.
Nature Reviews Genetics 7 (September 2006), 669-680.
[ PDF ]
Keywords: human migration
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[14]
|
Hammer, M. F., Karafet, T., Rasanayagam, A., Wood, E. T., K., A. T.,
Jenkins, T., Griffiths, R. C., Templeton, A. R., and Zegura, S. L.
Out of Africa and back again: nested cladistic analysis of human
Y chromosome variation.
Molecular Biology and Evolution 15, 4 (1998), 427-441.
[ PDF ]
Keywords: y chromosome, haplogroups
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[15]
|
Hammer, M. F., Karafet, T. M., Redd, A. J., Jarjanazi, H., and et al.
Hierarchical patterns of global human Y-chromosome diversity.
Molecular Biology and Evolution 18 (2001), 1189-1203.
[ PDF ]
Keywords: human evolution
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[16]
|
Hammer, M. F., and Zegura, S. L.
The role of the Y chromosome in human evolutionary studies.
Evolutionary Anthropology: Issues, News, and Reviews 5, 4
(1996), 116-134.
[ PDF ]
Keywords: human evolution
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[17]
|
Hastie, T., Tibshirani, R., and Friedman, J.
The elements of statistical learning.
Springer, 2006.
Keywords: pattern recognition, machine learning
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[18]
|
Heyer, E., Puymirat, J., Dieltjes, P., Bakker, E., and de Knijff, P.
Estimating Y chromosome specific microsatellite mutation
frequencies using deep rooting pedigrees.
Human Molecular Genetics 6 (1997), 799-803.
[ PDF ]
Keywords: y chromosome
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[19]
|
Jobling, M. A.
In the name of the father: surnames and genetics.
Trends in Genetics 17, 6 (June 2001), 353-357.
[ PDF ]
Keywords: y chromosome
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[20]
|
Jobling, M. A., Pandya, A., and Tyler-Smith, C.
The Y chromosome in forensic analysis and paternity testing.
International Journal of Legal Medicine 110, 3 (June 1997),
118-124.
[ PDF ]
Keywords: y chromosome
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[21]
|
Jobling, M. A., and Tyler-Smith, C.
New uses for new haplotypes - the human Y chromosome, disease and
selection.
Trends in Genetics 16, 8 (August 2000), 356-362.
[ PDF ]
Keywords: y chromosome
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[22]
|
Jobling, M. A., and Tyler-Smith, C.
The human Y chromosome: an evolutionary marker comes of age.
Nature Reviews Genetics 4, 8 (August 2003), 598-612.
[ PDF ]
Keywords: haplogroups, y chromosome
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[23]
|
Kayser, M., Roewer, L., Hedman, M., Henke, L., and et al.
Characteristics and frequency of germline mutations at microsatellite
loci from the human Y chromosome, as revealed by direct observation in
father/son pairs.
The American Journal of Human Genetics 66 (2000), 1580-1588.
Keywords: y chromosome
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[24]
|
Ohta, T., and Kimura, M.
The model of mutation appropriate to estimate the number of
electrophoretically detectable alleles in a genetic population.
Genetic Research 22 (1973), 201-204.
Keywords: stepwise mutation model
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[25]
|
Quinlan, J. R.
C4.5: Programs for Machine Learning.
Morgan Kaufmann, San Francisco, 1993.
Keywords: decision trees, machine learning, pattern recognition
|
|
[26]
|
Rish, I.
An empirical study of the naive Bayes classifier.
In IJCAI 2001 Workshop on Empirical Methods in Artificial
Intelligence (2001).
Keywords: statistical inference, naive bayes
|
|
[27]
|
Schlecht, J., Kaplan, M. E., Barnard, K., Karafet, T., Hammer, M. F., and
Merchant, N. C.
Machine-learning approaches for classifying haplogroup from Y
chromosome STR data.
PLoS Computational Biology 4, 6 (June 2008), e1000093.
[ PDF ]
Keywords: machine learning, haplogroups
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[28]
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Sengupta, S., Zhivotovsky, L. A., King, R., Mehdi, S. Q., and et al.
Polarity and temporality of high-resolution y-chromosome
distributions in India identify both indigenous and exogenous expansions
and reveal minor genetic influence of central asian pastoralists.
American Journal of Human Genetics 78 (2006), 202-221.
Keywords: haplogroups, y chromosome
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[29]
|
Shannon, C. E.
A mathematical theory of communication.
Bell System Technical Journal 27 (July, October 1948),
379-423,623-656.
[ PDF ]
Keywords: information theory, information entropy
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|
[30]
|
Sharan, R., Gramm, J., Yakhini, Z., and Ben-Dor, A.
Multiplexing schemes for generic SNP genotyping assays.
Journal of Computational Biology 12, 5 (2005), 514-533.
Keywords: y chromosome
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[31]
|
Stone, A. C., Griffiths, R. C., Zegura, S. L., and Hammer, M. F.
High levels of Y-chromosome nucleotide diversity in the genus
pan.
In Proceedings of the National Academy of Sciences (2002),
pp. 43-48.
[ PDF ]
Keywords: human evolution
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[32]
|
Stone, A. C., Milner, G. R., Paabo, S., and Stoneking, M.
Sex determination of ancient human skeletons using DNA.
American Journal of Physical Anthropology 99, 2 (1996),
231-238.
[ PDF ]
Keywords: human evolution
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[33]
|
Stringer, C. B., and Andrews, P.
Genetic and fossil evidence for the origin of modern humans.
Science 239 (1988), 1263-1268.
Keywords: human evolution
|
|
[34]
|
Tsochantaridis, I., Hofmann, T., Joachims, T., and Altun, Y.
Support vector machine learning for interdependent and structured
output spaces.
In ICML '04: Proceedings of the twenty-first international
conference on machine learning (2004), p. 104.
[ PDF ]
Keywords: support vector machines, machine learning, pattern recognition
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[35]
|
Underhill, P. A., Passarino, G., Lin, A. A., Shen, P., and et al.
The phylogeography of Y chromosome binary haplotypes and the
origins of modern human populations.
Annals of Human Genetics 65 (2001), 43-62.
[ PDF ]
Keywords: human evolution
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[36]
|
Underhill, P. A., Shen, P., Lin, A. A., Jin, L., and et al.
Y chromosome sequence variation and the history of human
populations.
Nature Genetics 25 (November 2000), 358-361.
[ PDF ]
Keywords: human evolution
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[37]
|
Vapnik, V. N.
Statistical Learning Theory.
Wiley and Sons Inc, 1998.
Keywords: support vector machines, machine learning, pattern recognition
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[38]
|
Walsh, B.
Estimating the time to the most recent common ancestor for the Y
chromosome or mitochondrial DNA for a pair of individuals.
Genetics 158 (June 2001), 197-912.
[ PDF ]
Keywords: statistical inference, stepwise mutation model
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[39]
|
Witten, I. H., and Frank, E.
Data mining: practical machine learning tools and techniques,
second ed.
Morgan Kaufmann, San Francisco, 2005.
Keywords: machine learning, pattern recognition
|
|
[40]
|
YCC.
A nomenclature system for the tree of human y-chromosomal binary
haplogroups.
Genome Research 12 (2002), 339-348.
[ PDF ]
Keywords: haplogroups, human evolution, y chromosome
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[41]
|
Zhange, H.
The optimality of naive bayes.
In Proceedings of the 17th International FLAIRS conference
(2004).
Keywords: statistical inference, naive bayes
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