Latest version: 0.2
Fits connected ellipsoids and cylinders to the structure of microscopic fungus in a 3-D stack of images. The inferred structure follows a grammar for growth specific to Alternaria, a genus of fungus.
The images are explained with a probabilistic, generative model over the structure of Alternaria and the camera capturing it. Samples of geometric parts, their topology, and microscope parameters are generated during statistical inference, simultaneously fitting instances of the structure and camera to an image stack.
Additional tools are included to generate and view structure models.
Implements the approach described in the research project: Learning models of object structure.
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