Implemented nonmaximal suppression, background subtraction.
Derived/implemented expression for cubic covariance function for negative time-points.
Tested/debugged branch parameter estimation. Implemented a visualization that revealed several issues during optimization. Found a bug in gradient, which improved performance. Also realized that adding a constant perturbation per stem allows much better fitting for touching/crossing curves. To implement this, I created a "hamming distance" covariance function, which adds a constant offset to each child. Also, increasing the value on the diagonal improves gradient estimates, making optimization converge faster.
Incorporated parent estimation into end-to-end fitting routine.
Post-tracking tasks:
General procedure for fitting:
Open issues